Publications

Sorrell, EL, Lubkin, SR (2021). Bubble packing, eccentricity, and notochord development. Cells Dev 169, 203753. PubMed PMID:34728430.

Lin, CY, Sun, Y, Song, J, Chen, HC, Shi, R, Yang, C, Liu, J, Tunlaya-Anukit, S, Liu, B, Loziuk, PL et al. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. Front Plant Sci 12, 727932. PubMed PMID:34691108.

Amaral, AF, McQueen, BE, Bellingham-Johnstun, K, Poston, TB, Darville, T, Nagarajan, UM, Laplante, C, Käser, T (2021). Host-Pathogen Interactions of Chlamydia trachomatis in Porcine Oviduct Epithelial Cells. Pathogens 10, . PubMed PMID:34684219.

Begley, MA, Solon, AL, Davis, EM, Sherrill, MG, Ohi, R, Elting, MW (2021). K-fiber bundles in the mitotic spindle are mechanically reinforced by Kif15. Mol Biol Cell 32, br11. PubMed PMID:34668719.

Sobral, AF, Chan, FY, Norman, MJ, Osório, DS, Dias, AB, Ferreira, V, Barbosa, DJ, Cheerambathur, D, Gassmann, R, Belmonte, JM et al. (2021). Plastin and spectrin cooperate to stabilize the actomyosin cortex during cytokinesis. Curr Biol , . PubMed PMID:34666005.

Sen, D, Voulgaropoulos, A, Keung, AJ (2021). Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids. BMC Biotechnol 21, 59. PubMed PMID:34641840.

Clark, NM, Nolan, TM, Wang, P, Song, G, Montes, C, Valentine, CT, Guo, H, Sozzani, R, Yin, Y, Walley, JW et al. (2021). Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. Nat Commun 12, 5858. PubMed PMID:34615886.

Thomas, H, Van den Broeck, L, Spurney, R, Sozzani, R, Frank, M (2021). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. Plant Cell , . PubMed PMID:34609518.

Cai, Y, Zhang, X, Kovalsky, SZ, Ghashghaei, HT, Greenbaum, A (2021). Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet. PLoS One 16, e0257426. PubMed PMID:34559842.

Plant Cell Atlas Consortium, Jha, SG, Borowsky, AT, Cole, BJ, Fahlgren, N, Farmer, A, Huang, SC, Karia, P, Libault, M, Provart, NJ et al. (2021). Vision, challenges and opportunities for a Plant Cell Atlas. Elife 10, . PubMed PMID:34491200.

Wyatt, BH, Amin, NM, Bagley, K, Wcisel, DJ, Dush, MK, Yoder, JA, Nascone-Yoder, NM (2021). Single-minded 2 is required for left-right asymmetric stomach morphogenesis. Development 148, . PubMed PMID:34486651.

Lee, JB, Caywood, LM, Lo, JY, Levering, N, Keung, AJ (2021). Mapping the dynamic transfer functions of eukaryotic gene regulation. Cell Syst 12, 1079-1093.e6. PubMed PMID:34469745.

Bhide, S, Gombalova, D, Mönke, G, Stegmaier, J, Zinchenko, V, Kreshuk, A, Belmonte, JM, Leptin, M (2021). Mechanical competition alters the cellular interpretation of an endogenous genetic program. J Cell Biol 220, . PubMed PMID:34449835.

Matthews, ML, Williams, CM (2021). Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences. Methods Mol Biol 2328, 115-138. PubMed PMID:34251622.

Spurney, R, Schwartz, M, Gobble, M, Sozzani, R, Van den Broeck, L (2021). Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification. Methods Mol Biol 2328, 47-65. PubMed PMID:34251619.

Waldman, AC, Rao, BM, Keung, AJ (2021). Mapping the residue specificities of epigenome enzymes by yeast surface display. Cell Chem Biol , . PubMed PMID:34186032.

Elting, MW (2021). Cytoskeletal biophysics: Passive crosslinker adapts to keep microtubule bundles on track. Curr Biol 31, R793-R796. PubMed PMID:34157264.

Uzsoy, ASM, Zareiesfandabadi, P, Jennings, J, Kemper, AF, Elting, MW (2021). Automated tracking of S. pombe spindle elongation dynamics. J Microsc 284, 83-94. PubMed PMID:34152622.

Betegón-Putze, I, Mercadal, J, Bosch, N, Planas-Riverola, A, Marquès-Bueno, M, Vilarrasa-Blasi, J, Frigola, D, Burkart, RC, Martínez, C, Conesa, A et al. (2021). Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots. Mol Syst Biol 17, e9864. PubMed PMID:34132490.

Tomek, KJ, Volkel, K, Indermaur, EW, Tuck, JM, Keung, AJ (2021). Promiscuous molecules for smarter file operations in DNA-based data storage. Nat Commun 12, 3518. PubMed PMID:34112775.

Zhang, Y, Ho, TD, Buchler, NE, Gordân, R (2021). Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions. Genome Res , . PubMed PMID:33975875.

Adhyapok, P, Piatkowska, AM, Norman, MJ, Clendenon, SG, Stern, CD, Glazier, JA, Belmonte, JM (2021). A mechanical model of early somite segmentation. iScience 24, 102317. PubMed PMID:33889816.

Orozco-Navarrete, B, Song, J, Casañal, A, Sozzani, R, Flors, V, Sánchez-Sevilla, JF, Trinkl, J, Hoffmann, T, Merchante, C, Schwab, W et al. (2021). Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response. Hortic Res 8, 58. PubMed PMID:33750764.

Sen, D, Drobna, Z, Keung, AJ (2021). Evaluation of UBE3A antibodies in mice and human cerebral organoids. Sci Rep 11, 6323. PubMed PMID:33737669.

Buckner, E, Tong, H, Ottley, C, Williams, C (2021). High-throughput image segmentation and machine learning approaches in the plant sciences across multiple scales. Emerg Top Life Sci 5, 239-248. PubMed PMID:33660762.

Matange, K, Tuck, JM, Keung, AJ (2021). DNA stability: a central design consideration for DNA data storage systems. Nat Commun 12, 1358. PubMed PMID:33649304.

Kudenov, MW, Scarboro, CG, Altaqui, A, Boyette, M, Yencho, GC, Williams, CM (2021). Internal defect scanning of sweetpotatoes using interactance spectroscopy. PLoS One 16, e0246872. PubMed PMID:33561172.

Bellingham-Johnstun, K, Anders, EC, Ravi, J, Bruinsma, C, Laplante, C (2021). Molecular organization of cytokinesis node predicts the constriction rate of the contractile ring. J Cell Biol 220, . PubMed PMID:33496728.

Matthews, ML, Wang, JP, Sederoff, R, Chiang, VL, Williams, CM (2021). A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa. Comput Struct Biotechnol J 19, 168-182. PubMed PMID:33425249.

Zhang, X, Mennicke, CV, Xiao, G, Beattie, R, Haider, MA, Hippenmeyer, S, Ghashghaei, HT (2020). Clonal Analysis of Gliogenesis in the Cerebral Cortex Reveals Stochastic Expansion of Glia and Cell Autonomous Responses to Egfr Dosage. Cells 9, . PubMed PMID:33322301.

Van Norman, JM, Strader, LC, Sozzani, R (2020). Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth. Curr Opin Plant Biol 57, A1-A3. PubMed PMID:33298311.

Crook, AD, Willoughby, AC, Hazak, O, Okuda, S, VanDerMolen, KR, Soyars, CL, Cattaneo, P, Clark, NM, Sozzani, R, Hothorn, M et al. (2020). BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots. Proc Natl Acad Sci U S A 117, 32750-32756. PubMed PMID:33288706.

Daniels, KE, Elting, MW (2020). Knitting Ripples. Patterns (N Y) 1, 100034. PubMed PMID:33205101.

Grzymkowski, J, Wyatt, B, Nascone-Yoder, N (2020). The twists and turns of left-right asymmetric gut morphogenesis. Development 147, . PubMed PMID:33046455.

Sen, D, Voulgaropoulos, A, Drobna, Z, Keung, AJ (2020). Human Cerebral Organoids Reveal Early Spatiotemporal Dynamics and Pharmacological Responses of UBE3A. Stem Cell Reports 15, 845-854. PubMed PMID:32916124.

Sen, D, Keung, AJ (2020). Capturing complex epigenetic phenomena through human multicellular systems. Curr Opin Biomed Eng 16, 34-41. PubMed PMID:32905378.

Buckner, E, Madison, I, Melvin, C, Long, T, Sozzani, R, Williams, C (2020). BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana. Methods Cell Biol 160, 419-436. PubMed PMID:32896332.

Madison, I, Melvin, C, Buckner, E, Williams, C, Sozzani, R, Long, T (2020). MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy. Methods Cell Biol 160, 405-418. PubMed PMID:32896331.

Parry, G, Provart, NJ, Brady, SM, Uzilday, B, Multinational Arabidopsis Steering Committee (2020). Current status of the multinational Arabidopsis community. Plant Direct 4, e00248. PubMed PMID:32775952.

Tong, H, Madison, I, Long, TA, Williams, CM (2020). Computational solutions for modeling and controlling plant response to abiotic stresses: a review with focus on iron deficiency. Curr Opin Plant Biol 57, 8-15. PubMed PMID:32619968.

Van den Broeck, L, Gordon, M, Inzé, D, Williams, C, Sozzani, R (2020). Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling. Front Genet 11, 457. PubMed PMID:32547596.

Clark, NM, Fisher, AP, Berckmans, B, Van den Broeck, L, Nelson, EC, Nguyen, TT, Bustillo-Avendaño, E, Zebell, SG, Moreno-Risueno, MA, Simon, R et al. (2020). Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division. Proc Natl Acad Sci U S A 117, 15332-15342. PubMed PMID:32541020.

Lin, KN, Volkel, K, Tuck, JM, Keung, AJ (2020). Dynamic and scalable DNA-based information storage. Nat Commun 11, 2981. PubMed PMID:32532979.

Medina, EM, Buchler, NE (2020). Chytrid fungi. Curr Biol 30, R516-R520. PubMed PMID:32428492.

Fortuna, I, Perrone, GC, Krug, MS, Susin, E, Belmonte, JM, Thomas, GL, Glazier, JA, de Almeida, RMC (2020). CompuCell3D Simulations Reproduce Mesenchymal Cell Migration on Flat Substrates. Biophys J 118, 2801-2815. PubMed PMID:32407685.

Medina, EM, Robinson, KA, Bellingham-Johnstun, K, Ianiri, G, Laplante, C, Fritz-Laylin, LK, Buchler, NE (2020). Genetic transformation of Spizellomyces punctatus, a resource for studying chytrid biology and evolutionary cell biology. Elife 9, . PubMed PMID:32392127.

Matthews, ML, Wang, JP, Sederoff, R, Chiang, VL, Williams, CM (2020). Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa. PLoS Comput Biol 16, e1007197. PubMed PMID:32275650.

Clark, NM, Van den Broeck, L, Guichard, M, Stager, A, Tanner, HG, Blilou, I, Grossmann, G, Iyer-Pascuzzi, AS, Maizel, A, Sparks, EE et al. (2020). Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big. Annu Rev Plant Biol 71, 789-816. PubMed PMID:32119794.

Wu, J, Tian, WJ, Liu, Y, Wang, HJ, Zheng, J, Wang, X, Pan, H, Li, J, Luo, J, Yang, X et al. (2020). Ependyma-expressed CCN1 restricts the size of the neural stem cell pool in the adult ventricular-subventricular zone. EMBO J 39, e101679. PubMed PMID:32009252.

Johnson, CA, Ghashghaei, HT (2020). Sp2 regulates late neurogenic but not early expansive divisions of neural stem cells underlying population growth in the mouse cortex. Development 147, . PubMed PMID:32001437.

Clark, NM, Buckner, E, Fisher, AP, Nelson, EC, Nguyen, TT, Simmons, AR, de Luis Balaguer, MA, Butler-Smith, T, Sheldon, PJ, Bergmann, DC et al. (2019). Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks. Nat Commun 10, 5574. PubMed PMID:31811116.

Buckner, E, Madison, I, Chou, H, Matthiadis, A, Melvin, CE, Sozzani, R, Williams, C, Long, TA (2019). Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division. Front Plant Sci 10, 1487. PubMed PMID:31803217.

Gowans, GJ, Bridgers, JB, Zhang, J, Dronamraju, R, Burnetti, A, King, DA, Thiengmany, AV, Shinsky, SA, Bhanu, NV, Garcia, BA et al. (2019). Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Mol Cell 76, 909-921.e3. PubMed PMID:31676231.

Gómez-Schiavon, M, Buchler, NE (2019). Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise. PLoS Comput Biol 15, e1007364. PubMed PMID:31658246.

Medina, EM, Walsh, E, Buchler, NE (2019). Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain. Curr Opin Genet Dev 58-59, 103-110. PubMed PMID:31600629.

Spurney, RJ, Van den Broeck, L, Clark, NM, Fisher, AP, de Luis Balaguer, MA, Sozzani, R (2020). tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks. Plant J 101, 716-730. PubMed PMID:31571287.

Vallarino, JG, Merchante, C, Sánchez-Sevilla, JF, de Luis Balaguer, MA, Pott, DM, Ariza, MT, Casañal, A, Posé, D, Vioque, A, Amaya, I et al. (2020). Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development. Plant Biotechnol J 18, 929-943. PubMed PMID:31533196.

Powers, SK, Holehouse, AS, Korasick, DA, Schreiber, KH, Clark, NM, Jing, H, Emenecker, R, Han, S, Tycksen, E, Hwang, I et al. (2019). Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana. Mol Cell 76, 177-190.e5. PubMed PMID:31421981.

Jenkins, MM, Almli, LM, Pangilinan, F, Chong, JX, Blue, EE, Shapira, SK, White, J, McGoldrick, D, Smith, JD, Mullikin, JC et al. (2019). Exome sequencing of family trios from the National Birth Defects Prevention Study: Tapping into a rich resource of genetic and environmental data. Birth Defects Res 111, 1618-1632. PubMed PMID:31328417.

Lin, YT, Buchler, NE (2019). Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts. J Chem Phys 151, 024106. PubMed PMID:31301707.

Liao, C, Ttofali, F, Slotkowski, RA, Denny, SR, Cecil, TD, Leenay, RT, Keung, AJ, Beisel, CL (2019). Modular one-pot assembly of CRISPR arrays enables library generation and reveals factors influencing crRNA biogenesis. Nat Commun 10, 2948. PubMed PMID:31270316.

Argueso, CT, Assmann, SM, Birnbaum, KD, Chen, S, Dinneny, JR, Doherty, CJ, Eveland, AL, Friesner, J, Greenlee, VR, Law, JA et al. (2019). Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct 3, e00133. PubMed PMID:31245771.

Giuffre, C, Lubkin, SR, Tarpy, DR (2019). Does viral load alter behavior of the bee parasite Varroa destructor?. PLoS One 14, e0217975. PubMed PMID:31194803.

Tomek, KJ, Volkel, K, Simpson, A, Hass, AG, Indermaur, EW, Tuck, JM, Keung, AJ (2019). Driving the Scalability of DNA-Based Information Storage Systems. ACS Synth Biol 8, 1241-1248. PubMed PMID:31117362.

Dush, MK, Nascone-Yoder, NM (2019). Vangl2 coordinates cell rearrangements during gut elongation. Dev Dyn 248, 569-582. PubMed PMID:31081963.

Di Mambro, R, Svolacchia, N, Dello Ioio, R, Pierdonati, E, Salvi, E, Pedrazzini, E, Vitale, A, Perilli, S, Sozzani, R, Benfey, PN et al. (2019). The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size. Curr Biol 29, 1199-1205.e4. PubMed PMID:30880016.

Gordon, M, Williams, C (2019). PVC Detection Using a Convolutional Autoencoder and Random Forest Classifier. Pac Symp Biocomput 24, 42-53. PubMed PMID:30864309.

Chen, LF, Lin, YT, Gallegos, DA, Hazlett, MF, Gómez-Schiavon, M, Yang, MG, Kalmeta, B, Zhou, AS, Holtzman, L, Gersbach, CA et al. (2019). Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes. Cell Rep 26, 1174-1188.e5. PubMed PMID:30699347.

Smet, W, Sevilem, I, de Luis Balaguer, MA, Wybouw, B, Mor, E, Miyashima, S, Blob, B, Roszak, P, Jacobs, TB, Boekschoten, M et al. (2019). DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW. Curr Biol 29, 520-529.e6. PubMed PMID:30686737.

Miyashima, S, Roszak, P, Sevilem, I, Toyokura, K, Blob, B, Heo, JO, Mellor, N, Help-Rinta-Rahko, H, Otero, S, Smet, W et al. (2019). Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature 565, 490-494. PubMed PMID:30626969.

Wang, JP, Matthews, ML, Naik, PP, Williams, CM, Ducoste, JJ, Sederoff, RR, Chiang, VL (2019). Flux modeling for monolignol biosynthesis. Curr Opin Biotechnol 56, 187-192. PubMed PMID:30557780.

Park, M, Patel, N, Keung, AJ, Khalil, AS (2019). Engineering Epigenetic Regulation Using Synthetic Read-Write Modules. Cell 176, 227-238.e20. PubMed PMID:30528434.

Laplante, C (2018). Building the contractile ring from the ground up: a lesson in perseverance and scientific creativity. Biophys Rev 10, 1491-1497. PubMed PMID:30448942.

Haque, S, Ahmad, JS, Clark, NM, Williams, CM, Sozzani, R (2019). Computational prediction of gene regulatory networks in plant growth and development. Curr Opin Plant Biol 47, 96-105. PubMed PMID:30445315.

Buckner, E, Ottley, C, Williams, C, Luis Balaguer, A, Melvin, CE, Sozzani, R (2018). Tracking Gene Expression via Light Sheet Microscopy and Computer Vision in Living Organisms. Annu Int Conf IEEE Eng Med Biol Soc 2018, 818-821. PubMed PMID:30440517.

Clark, NM, Fisher, AP, Sozzani, R (2018). Identifying Differentially Expressed Genes Using Fluorescence-Activated Cell Sorting (FACS) and RNA Sequencing from Low Input Samples. Methods Mol Biol 1819, 139-151. PubMed PMID:30421402.

Wollrab, V, Belmonte, JM, Baldauf, L, Leptin, M, Nédeléc, F, Koenderink, GH (2018). Polarity sorting drives remodeling of actin-myosin networks. J Cell Sci 132, . PubMed PMID:30404824.

Ehling, S, Butler, A, Thi, S, Ghashghaei, HT, Bäumer, W (2018). To scratch an itch: Establishing a mouse model to determine active brain areas involved in acute histaminergic itch. IBRO Rep 5, 67-73. PubMed PMID:30364768.

Mwimba, M, Karapetyan, S, Liu, L, Marqués, J, McGinnis, EM, Buchler, NE, Dong, X (2018). Daily humidity oscillation regulates the circadian clock to influence plant physiology. Nat Commun 9, 4290. PubMed PMID:30327472.

Norman, J, Sorrell, EL, Hu, Y, Siripurapu, V, Garcia, J, Bagwell, J, Charbonneau, P, Lubkin, SR, Bagnat, M (2018). Tissue self-organization underlies morphogenesis of the notochord. Philos Trans R Soc Lond B Biol Sci 373, . PubMed PMID:30249771.

Brudvig, JJ, Cain, JT, Sears, RM, Schmidt-Grimminger, GG, Wittchen, ES, Adler, KB, Ghashghaei, HT, Weimer, JM (2018). MARCKS regulates neuritogenesis and interacts with a CDC42 signaling network. Sci Rep 8, 13278. PubMed PMID:30185885.

Rognoni, E, Pisco, AO, Hiratsuka, T, Sipilä, KH, Belmonte, JM, Mobasseri, SA, Philippeos, C, Dilão, R, Watt, FM (2018). Fibroblast state switching orchestrates dermal maturation and wound healing. Mol Syst Biol 14, e8174. PubMed PMID:30158243.

Elting, MW, Suresh, P, Dumont, S (2018). The Spindle: Integrating Architecture and Mechanics across Scales. Trends Cell Biol 28, 896-910. PubMed PMID:30093097.

O'Lexy, R, Kasai, K, Clark, N, Fujiwara, T, Sozzani, R, Gallagher, KL (2018). Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose. J Exp Bot 69, 3715-3728. PubMed PMID:29901781.

Womble, M, Amin, NM, Nascone-Yoder, N (2018). The left-right asymmetry of liver lobation is generated by Pitx2c-mediated asymmetries in the hepatic diverticulum. Dev Biol 439, 80-91. PubMed PMID:29709601.

Wang, JP, Matthews, ML, Williams, CM, Shi, R, Yang, C, Tunlaya-Anukit, S, Chen, HC, Li, Q, Liu, J, Lin, CY et al. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nat Commun 9, 1579. PubMed PMID:29679008.

Lee, JB, Keung, AJ (2018). Chromatin Immunoprecipitation in Human and Yeast Cells. Methods Mol Biol 1767, 257-269. PubMed PMID:29524140.

Sen, D, Keung, AJ (2018). Designing Epigenome Editors: Considerations of Biochemical and Locus Specificities. Methods Mol Biol 1767, 65-87. PubMed PMID:29524129.

Naik, P, Wang, JP, Sederoff, R, Chiang, V, Williams, C, Ducoste, JJ (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLoS One 13, e0193896. PubMed PMID:29509777.

Shibata, M, Breuer, C, Kawamura, A, Clark, NM, Rymen, B, Braidwood, L, Morohashi, K, Busch, W, Benfey, PN, Sozzani, R et al. (2018). GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development 145, . PubMed PMID:29439132.

Lin, YT, Buchler, NE (2018). Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes. J R Soc Interface 15, . PubMed PMID:29386401.

Laplante, C (2018). Resolving single-actin filaments within the contractile ring of fission yeast. Proc Natl Acad Sci U S A 115, 1403-1405. PubMed PMID:29386379.

Muthusamy, N, Brumm, A, Zhang, X, Carmichael, ST, Ghashghaei, HT (2018). Foxj1 expressing ependymal cells do not contribute new cells to sites of injury or stroke in the mouse forebrain. Sci Rep 8, 1766. PubMed PMID:29379049.

Bun, P, Dmitrieff, S, Belmonte, JM, Nédélec, FJ, Lénárt, P (2018). A disassembly-driven mechanism explains F-actin-mediated chromosome transport in starfish oocytes. Elife 7, . PubMed PMID:29350616.

George, UZ, Lubkin, SR (2018). Tissue geometry may govern lung branching mode selection. J Theor Biol 442, 22-30. PubMed PMID:29330055.

Liao, KL, Melvin, CE, Sozzani, R, Jones, RD, Elston, TC, Jones, AM (2017). Dose-Duration Reciprocity for G protein activation: Modulation of kinase to substrate ratio alters cell signaling. PLoS One 12, e0190000. PubMed PMID:29287086.

Friesner, J, Assmann, SM, Bastow, R, Bailey-Serres, J, Beynon, J, Brendel, V, Buell, CR, Bucksch, A, Busch, W, Demura, T et al. (2017). The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiol 175, 1499-1509. PubMed PMID:29208732.

Wendrich, JR, Möller, BK, Li, S, Saiga, S, Sozzani, R, Benfey, PN, De Rybel, B, Weijers, D (2017). Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem. Proc Natl Acad Sci U S A 114, E8922-E8929. PubMed PMID:28973915.

Belmonte, JM, Leptin, M, Nédélec, F (2017). A theory that predicts behaviors of disordered cytoskeletal networks. Mol Syst Biol 13, 941. PubMed PMID:28954810.

Gómez-Schiavon, M, Chen, LF, West, AE, Buchler, NE (2017). BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells. Genome Biol 18, 164. PubMed PMID:28870226.

Di Mambro, R, De Ruvo, M, Pacifici, E, Salvi, E, Sozzani, R, Benfey, PN, Busch, W, Novak, O, Ljung, K, Di Paola, L et al. (2017). Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root. Proc Natl Acad Sci U S A 114, E7641-E7649. PubMed PMID:28831001.

de Luis Balaguer, MA, Fisher, AP, Clark, NM, Fernandez-Espinosa, MG, Möller, BK, Weijers, D, Lohmann, JU, Williams, C, Lorenzo, O, Sozzani, R et al. (2017). Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc Natl Acad Sci U S A 114, E7632-E7640. PubMed PMID:28827319.

Coneva, V, Frank, MH, Balaguer, MAL, Li, M, Sozzani, R, Chitwood, DH (2017). Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii. Plant Physiol 175, 376-391. PubMed PMID:28794258.

Hendler, A, Medina, EM, Buchler, NE, de Bruin, RAM, Aharoni, A (2018). The evolution of a G1/S transcriptional network in yeasts. Curr Genet 64, 81-86. PubMed PMID:28744706.

Elting, MW, Prakash, M, Udy, DB, Dumont, S (2017). Mapping Load-Bearing in the Mammalian Spindle Reveals Local Kinetochore Fiber Anchorage that Provides Mechanical Isolation and Redundancy. Curr Biol 27, 2112-2122.e5. PubMed PMID:28690110.

Pickett, MA, Dush, MK, Nascone-Yoder, NM (2017). Acetylcholinesterase plays a non-neuronal, non-esterase role in organogenesis. Development 144, 2764-2770. PubMed PMID:28684626.

de Luis Balaguer, MA, Sozzani, R (2017). Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach. Methods Mol Biol 1629, 331-348. PubMed PMID:28623595.

Hendler, A, Medina, EM, Kishkevich, A, Abu-Qarn, M, Klier, S, Buchler, NE, de Bruin, RAM, Aharoni, A (2017). Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness. PLoS Genet 13, e1006778. PubMed PMID:28505153.

Karg, T, Elting, MW, Vicars, H, Dumont, S, Sullivan, W (2017). The chromokinesin Klp3a and microtubules facilitate acentric chromosome segregation. J Cell Biol 216, 1597-1608. PubMed PMID:28500183.

Johnson, CA, Wright, CE, Ghashghaei, HT (2017). Regulation of cytokinesis during corticogenesis: focus on the midbody. FEBS Lett 591, 4009-4026. PubMed PMID:28493553.

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