Publications

Tyree, ZL, Bellingham-Johnstun, K, Martinez-Baird, J, Laplante, C (2024). The Myosin-V Myo51 and Alpha-Actinin Ain1p Cooperate during Contractile Ring Assembly and Disassembly in Fission Yeast Cytokinesis. J Fungi (Basel) 10, . PubMed PMID:39330407.

Birnbaum, KD, Brady, SM, Gallagher, KL, Jung, J, Pourquié, O, Scheres, B, Shahan, R, Sozzani, R, Strader, L (2024). Philip Benfey (1953-2023). Nat Plants 10, 1436-1438. PubMed PMID:39289549.

Brooks, ER, Moorman, AR, Bhattacharya, B, Prudhomme, I, Land, M, Alcorn, HL, Sharma, R, Pe'er, D, Zallen, JA (2024). A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate. bioRxiv , . PubMed PMID:39229123.

Al Asafen, H, Beseli, A, Chen, HY, Hiremath, S, Williams, CM, Reeves, GT (2024). Dynamics of BMP signaling and stable gene expression in the early Drosophila embryo. Biol Open 13, . PubMed PMID:39207258.

Lin, KN, Volkel, K, Cao, C, Hook, PW, Polak, RE, Clark, AS, San Miguel, A, Timp, W, Tuck, JM, Velev, OD et al. (2024). A primordial DNA store and compute engine. Nat Nanotechnol , . PubMed PMID:39174834.

Holland, MA, Maisel, K, Ibberson, CB, Wiley, LK, Burnett, DC, Mace, EM, Elting, MW (2024). Extended time, elevated expectations: The unappreciated downsides of pausing the tenure clock. Proc Natl Acad Sci U S A 121, e2403489121. PubMed PMID:39150787.

Li, C, Rai, MR, Cai, Y, Ghashghaei, HT, Greenbaum, A (2024). Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning. Intell Comput 3, . PubMed PMID:39099879.

Morffy, N, Van den Broeck, L, Miller, C, Emenecker, RJ, Bryant, JA Jr, Lee, TM, Sageman-Furnas, K, Wilkinson, EG, Pathak, S, Kotha, SR et al. (2024). Identification of plant transcriptional activation domains. Nature 632, 166-173. PubMed PMID:39020176.

Fadri, MTM, Lee, JB, Keung, AJ (2024). Summary of ChIP-Seq Methods and Description of an Optimized ChIP-Seq Protocol. Methods Mol Biol 2842, 419-447. PubMed PMID:39012609.

Yagci, ZB, Kelkar, GR, Johnson, TJ, Sen, D, Keung, AJ (2024). Designing Epigenome Editors: Considerations of Biochemical and Locus Specificities. Methods Mol Biol 2842, 23-55. PubMed PMID:39012589.

Kociemba, J, Jørgensen, ACS, Tadić, N, Harris, A, Sideri, T, Chan, WY, Ibrahim, F, Ünal, E, Skehel, M, Shahrezaei, V et al. (2024). Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast. EMBO J 43, 3256-3286. PubMed PMID:38886580.

Baker, J, Schunk, N, Scholz, M, Merck, A, Muenich, RL, Westerhoff, P, Elser, JJ, Duckworth, OW, Gatiboni, L, Islam, M et al. (2024). Global-to-Local Dependencies in Phosphorus Mass Flows and Markets: Pathways to Improving System Resiliency in Response to Exogenous Shocks. Environ Sci Technol Lett 11, 493-502. PubMed PMID:38882202.

Ramakanth, S, Kennedy, T, Yalcinkaya, B, Neupane, S, Tadic, N, Buchler, NE, Argüello-Miranda, O (2024). Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle. bioRxiv , . PubMed PMID:38712227.

Pérez-Sancho, J, Van den Broeck, L, García-Caparros, P, Sozzani, R (2024). Insights into multilevel spatial regulation within the root stem cell niche. Curr Opin Genet Dev 86, 102200. PubMed PMID:38704928.

Grzymkowski, JK, Chiu, YC, Jima, DD, Wyatt, BH, Jayachandran, S, Stutts, WL, Nascone-Yoder, NM (2024). Developmental regulation of cellular metabolism is required for intestinal elongation and rotation. Development 151, . PubMed PMID:38369735.

Anon. (2024). The people behind the papers - Julia Grzymkowski and Nanette Nascone-Yoder. Development 151, . PubMed PMID:38369734.

Haverroth, E, Gobble, M, Bradley, L, Harris-Gilliam, K, Fischer, A, Williams, C, Long, T, Sozzani, R (2024). The Black American experience: Answering the global challenge of broadening participation in STEM/agriculture. Plant Cell 36, 807-811. PubMed PMID:38284514.

Nikas, AN, Curcio, EJ, Nascone-Yoder, N, Lubkin, SR (2024). Morphoelastic models discriminate between different mechanisms of left-right asymmetric stomach morphogenesis. Cells Dev 177, 203902. PubMed PMID:38281683.

Estridge, RC, O'Neill, JE, Keung, AJ (2023). Matrigel Tunes H9 Stem Cell-Derived Human Cerebral Organoid Development. Organoids 2, 165-176. PubMed PMID:38196836.

Li, C, Rai, MR, Cai, Y, Ghashghaei, HT, Greenbaum, A (2023). Enhancing Light-Sheet Fluorescence Microscopy Illumination Beams through Deep Design Optimization. bioRxiv , . PubMed PMID:38077074.

Curcio, EJ, Lubkin, SR (2024). Flexural rigidity of pressurized model notochords in regular packing patterns. Cells Dev 177, 203895. PubMed PMID:38040291.

Rudibaugh, TT, Stuppy, SR, Keung, AJ (2023). Reactive Oxygen Species Mediate Transcriptional Responses to Dopamine and Cocaine in Human Cerebral Organoids. Int J Mol Sci 24, . PubMed PMID:38003664.

Schmittling, SR, Muhammad, D, Haque, S, Long, TA, Williams, CM (2023). Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response. BMC Genomics 24, 620. PubMed PMID:37853316.

Volkel, KD, Lin, KN, Hook, PW, Timp, W, Keung, AJ, Tuck, JM (2023). FrameD: framework for DNA-based data storage design, verification, and validation. Bioinformatics 39, . PubMed PMID:37713474.

Blue, EE, White, JJ, Dush, MK, Gordon, WW, Wyatt, BH, White, P, Marvin, CT, Helle, E, Ojala, T, Priest, JR et al. (2023). Rare variants in CAPN2 increase risk for isolated hypoplastic left heart syndrome. HGG Adv 4, 100232. PubMed PMID:37663545.

Madison, I, Gillan, L, Peace, J, Gabrieli, F, Van den Broeck, L, Jones, JL, Sozzani, R (2023). Phosphate starvation: response mechanisms and solutions. J Exp Bot 74, 6417-6430. PubMed PMID:37611151.

Van den Broeck, L, Bhosale, DK, Song, K, Fonseca de Lima, CF, Ashley, M, Zhu, T, Zhu, S, Van De Cotte, B, Neyt, P, Ortiz, AC et al. (2023). Functional annotation of proteins for signaling network inference in non-model species. Nat Commun 14, 4654. PubMed PMID:37537196.

Madison, I, Amin, F, Song, K, Sozzani, R, Van den Broeck, L (2023). A Data-Driven Signaling Network Inference Approach for Phosphoproteomics. Methods Mol Biol 2690, 335-354. PubMed PMID:37450158.

Sulis, DB, Jiang, X, Yang, C, Marques, BM, Matthews, ML, Miller, Z, Lan, K, Cofre-Vega, C, Liu, B, Sun, R et al. (2023). Multiplex CRISPR editing of wood for sustainable fiber production. Science 381, 216-221. PubMed PMID:37440632.

Rudibaugh, TT, Keung, AJ (2023). Reactive Oxygen Species Mediate Transcriptional Responses to Dopamine and Cocaine in Human Cerebral Organoids. bioRxiv , . PubMed PMID:37398046.

Tam, RW, Keung, AJ (2023). Profiling transcriptomic responses of human stem cell-derived medium spiny neuron-like cells to exogenous phasic and tonic neurotransmitters. Mol Cell Neurosci 126, 103876. PubMed PMID:37385515.

Rai, MR, Li, C, Ghashghaei, HT, Greenbaum, A (2023). Deep learning-based adaptive optics for light sheet fluorescence microscopy. Biomed Opt Express 14, 2905-2919. PubMed PMID:37342701.

Floyd, C, Molines, AT, Lei, X, Honts, JE, Chang, F, Elting, MW, Vaikuntanathan, S, Dinner, AR, Bhamla, MS (2023). A unified model for the dynamics of ATP-independent ultrafast contraction. Proc Natl Acad Sci U S A 120, e2217737120. PubMed PMID:37307463.

Cai, Y, Zhang, X, Li, C, Ghashghaei, HT, Greenbaum, A (2023). COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains. Cell Rep Methods 3, 100454. PubMed PMID:37159668.

Bellingham-Johnstun, K, Thorn, A, Belmonte, JM, Laplante, C (2023). Microtubule competition and cell growth recenter the nucleus after anaphase in fission yeast. Mol Biol Cell 34, ar77. PubMed PMID:37099380.

Polak, RE, Keung, AJ (2023). A molecular assessment of the practical potential of DNA-based computation. Curr Opin Biotechnol 81, 102940. PubMed PMID:37058876.

Beretta, VM, Franchini, E, Ud Din, I, Lacchini, E, Van den Broeck, L, Sozzani, R, Orozco-Arroyo, G, Caporali, E, Adam, H, Jouannic, S et al. (2023). The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice. Plant J 115, 351-368. PubMed PMID:37009647.

Bellingham-Johnstun, K, Tyree, ZL, Martinez-Baird, J, Thorn, A, Laplante, C (2023). Actin-Microtubule Crosstalk Imparts Stiffness to the Contractile Ring in Fission Yeast. Cells 12, . PubMed PMID:36980258.

Zhang, X, Xiao, G, Johnson, C, Cai, Y, Horowitz, ZK, Mennicke, C, Coffey, R, Haider, M, Threadgill, D, Eliscu, R et al. (2023). Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain. iScience 26, 106242. PubMed PMID:36915679.

Bellingham-Johnstun, K, Tyree, ZL, Martinez-Baird, J, Thorn, A, Laplante, C (2023). Actin-microtubule crosstalk imparts stiffness to the contractile ring in fission yeast. bioRxiv , . PubMed PMID:36909652.

Han, L, Lee, JB, Indermaur, EW, Keung, AJ (2023). Chaetocin disrupts the SUV39H1-HP1 interaction independent of SUV39H1 methyltransferase activity. Biochem J 480, 421-432. PubMed PMID:36896918.

Bellingham-Johnstun, K, Thorn, A, Belmonte, J, Laplante, C (2023). Microtubule competition and cell growth recenter the nucleus after anaphase in fission yeast. bioRxiv , . PubMed PMID:36778333.

Begley, MA, Elting, MW (2023). Mitosis: Augmin-based bridges keep kinetochores in line. Curr Biol 33, R118-R121. PubMed PMID:36750026.

Curcio, EJ, Lubkin, SR (2023). Physical models of notochord cell packing reveal how tension ratios determine morphometry. Cells Dev 173, 203825. PubMed PMID:36706628.

Busato, S, Gordon, M, Chaudhari, M, Jensen, I, Akyol, T, Andersen, S, Williams, C (2023). Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies. Curr Opin Plant Biol 71, 102326. PubMed PMID:36538837.

Mustamin, Y, Akyol, TY, Gordon, M, Manggabarani, AM, Isomura, Y, Kawamura, Y, Bamba, M, Williams, C, Andersen, SU, Sato, S et al. (2023). FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus. Plant Physiol 191, 1138-1152. PubMed PMID:36448631.

Bellingham-Johnstun, K, Commer, B, Levesque, B, Tyree, ZL, Laplante, C (2022). Imp2p forms actin-dependent clusters and imparts stiffness to the contractile ring. Mol Biol Cell 33, ar145. PubMed PMID:36287824.

Van den Broeck, L, Schwartz, MF, Krishnamoorthy, S, Tahir, MA, Spurney, RJ, Madison, I, Melvin, C, Gobble, M, Nguyen, T, Peters, R et al. (2022). Establishing a reproducible approach to study cellular functions of plant cells with 3D bioprinting. Sci Adv 8, eabp9906. PubMed PMID:36240264.

Silva, AM, Chan, FY, Norman, MJ, Sobral, AF, Zanin, E, Gassmann, R, Belmonte, JM, Carvalho, AX (2023). β-heavy-spectrin stabilizes the constricting contractile ring during cytokinesis. J Cell Biol 222, . PubMed PMID:36219157.

Amses, KR, Simmons, DR, Longcore, JE, Mondo, SJ, Seto, K, Jerônimo, GH, Bonds, AE, Quandt, CA, Davis, WJ, Chang, Y et al. (2022). Diploid-dominant life cycles characterize the early evolution of Fungi. Proc Natl Acad Sci U S A 119, e2116841119. PubMed PMID:36037379.

Muhammad, D, Clark, NM, Haque, S, Williams, CM, Sozzani, R, Long, TA (2022). POPEYE intercellular localization mediates cell-specific iron deficiency responses. Plant Physiol 190, 2017-2032. PubMed PMID:35920794.

Zahn, N, James-Zorn, C, Ponferrada, VG, Adams, DS, Grzymkowski, J, Buchholz, DR, Nascone-Yoder, NM, Horb, M, Moody, SA, Vize, PD et al. (2022). Normal Table of Xenopus development: a new graphical resource. Development 149, . PubMed PMID:35833709.

Feng, W, Argüello-Miranda, O, Qian, S, Wang, F (2022). Cdc14 plans autophagy for meiotic cell divisions. Autophagy 18, 1481-1482. PubMed PMID:35617128.

Tam, RW, Keung, AJ (2022). Human Pluripotent Stem Cell-Derived Medium Spiny Neuron-like Cells Exhibit Gene Desensitization. Cells 11, . PubMed PMID:35563715.

Acuña-Rodriguez, JP, Mena-Vega, JP, Argüello-Miranda, O (2022). Live-cell fluorescence spectral imaging as a data science challenge. Biophys Rev 14, 579-597. PubMed PMID:35528031.

Meanor, JN, Keung, AJ, Rao, BM, Gera, N (2022). Yeast Display Guided Selection of pH-Dependent Binders. Methods Mol Biol 2491, 293-311. PubMed PMID:35482197.

Kudenov, MW, Altaqui, A, Williams, C (2022). Practical spectral photography II: snapshot spectral imaging using linear retarders and microgrid polarization cameras. Opt Express 30, 12337-12352. PubMed PMID:35472871.

Tong, H, Chen, H, Williams, CM (2022). Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs. Viruses 14, . PubMed PMID:35458567.

Adhikari, TB, Aryal, R, Redpath, LE, Van den Broeck, L, Ashrafi, H, Philbrick, AN, Jacobs, RL, Sozzani, R, Louws, FJ (2021). RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry. Front Genet 12, 805771. PubMed PMID:35360413.

Van den Broeck, L, Gobble, M, Sozzani, R (2022). Quantifying Intercellular Movement and Protein Stoichiometry for Computational Modeling. Methods Mol Biol 2457, 367-382. PubMed PMID:35349154.

Li, C, Rai, MR, Ghashghaei, HT, Greenbaum, A (2022). Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning. Biomed Opt Express 13, 888-901. PubMed PMID:35284156.

Moshtohry, M, Bellingham-Johnstun, K, Elting, MW, Laplante, C (2022). Laser ablation reveals the impact of Cdc15p on the stiffness of the contractile ring. Mol Biol Cell 33, br9. PubMed PMID:35274981.

Feng, W, Argüello-Miranda, O, Qian, S, Wang, F (2022). Cdc14 spatiotemporally dephosphorylates Atg13 to activate autophagy during meiotic divisions. J Cell Biol 221, . PubMed PMID:35238874.

Meanor, JN, Keung, AJ, Rao, BM (2022). Modified Histone Peptides Linked to Magnetic Beads Reduce Binding Specificity. Int J Mol Sci 23, . PubMed PMID:35163614.

Li, C, Moatti, A, Zhang, X, Ghashghaei, HT, Greenbaum, A (2022). Erratum: Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher's note. Biomed Opt Express 13, 373. PubMed PMID:35154877.

Muthusamy, N, Williams, TI, O'Toole, R, Brudvig, JJ, Adler, KB, Weimer, JM, Muddiman, DC, Ghashghaei, HT (2022). Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain. Geroscience 44, 2077-2094. PubMed PMID:35075585.

Zareiesfandabadi, P, Elting, MW (2022). Force by minus-end motors Dhc1 and Klp2 collapses the S. pombe spindle after laser ablation. Biophys J 121, 263-276. PubMed PMID:34951983.

Roszak, P, Heo, JO, Blob, B, Toyokura, K, Sugiyama, Y, de Luis Balaguer, MA, Lau, WWY, Hamey, F, Cirrone, J, Madej, E et al. (2021). Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization. Science 374, eaba5531. PubMed PMID:34941412.

Coller, HA (2022). Stressed-out yeast do not pass GO. J Cell Biol 221, . PubMed PMID:34932069.

Krishnamoorthy, S, Schwartz, MF, Van den Broeck, L, Hunt, A, Horn, TJ, Sozzani, R (2021). Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals. Biodes Res 2021, 9890319. PubMed PMID:37849953.

Sorrell, EL, Lubkin, SR (2022). Bubble packing, eccentricity, and notochord development. Cells Dev 169, 203753. PubMed PMID:34728430.

Argüello-Miranda, O, Marchand, AJ, Kennedy, T, Russo, MAX, Noh, J (2022). Cell cycle-independent integration of stress signals by Xbp1 promotes Non-G1/G0 quiescence entry. J Cell Biol 221, . PubMed PMID:34694336.

Lin, CY, Sun, Y, Song, J, Chen, HC, Shi, R, Yang, C, Liu, J, Tunlaya-Anukit, S, Liu, B, Loziuk, PL et al. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. Front Plant Sci 12, 727932. PubMed PMID:34691108.

Amaral, AF, McQueen, BE, Bellingham-Johnstun, K, Poston, TB, Darville, T, Nagarajan, UM, Laplante, C, Käser, T (2021). Host-Pathogen Interactions of Chlamydia trachomatis in Porcine Oviduct Epithelial Cells. Pathogens 10, . PubMed PMID:34684219.

Begley, MA, Solon, AL, Davis, EM, Sherrill, MG, Ohi, R, Elting, MW (2021). K-fiber bundles in the mitotic spindle are mechanically reinforced by Kif15. Mol Biol Cell 32, br11. PubMed PMID:34668719.

Sobral, AF, Chan, FY, Norman, MJ, Osório, DS, Dias, AB, Ferreira, V, Barbosa, DJ, Cheerambathur, D, Gassmann, R, Belmonte, JM et al. (2021). Plastin and spectrin cooperate to stabilize the actomyosin cortex during cytokinesis. Curr Biol 31, 5415-5428.e10. PubMed PMID:34666005.

Sen, D, Voulgaropoulos, A, Keung, AJ (2021). Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids. BMC Biotechnol 21, 59. PubMed PMID:34641840.

Clark, NM, Nolan, TM, Wang, P, Song, G, Montes, C, Valentine, CT, Guo, H, Sozzani, R, Yin, Y, Walley, JW et al. (2021). Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. Nat Commun 12, 5858. PubMed PMID:34615886.

Thomas, H, Van den Broeck, L, Spurney, R, Sozzani, R, Frank, M (2022). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. Plant Cell 34, 535-556. PubMed PMID:34609518.

Cai, Y, Zhang, X, Kovalsky, SZ, Ghashghaei, HT, Greenbaum, A (2021). Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet. PLoS One 16, e0257426. PubMed PMID:34559842.

Plant Cell Atlas Consortium, Jha, SG, Borowsky, AT, Cole, BJ, Fahlgren, N, Farmer, A, Huang, SC, Karia, P, Libault, M, Provart, NJ et al. (2021). Vision, challenges and opportunities for a Plant Cell Atlas. Elife 10, . PubMed PMID:34491200.

Wyatt, BH, Amin, NM, Bagley, K, Wcisel, DJ, Dush, MK, Yoder, JA, Nascone-Yoder, NM (2021). Single-minded 2 is required for left-right asymmetric stomach morphogenesis. Development 148, . PubMed PMID:34486651.

Lee, JB, Caywood, LM, Lo, JY, Levering, N, Keung, AJ (2021). Mapping the dynamic transfer functions of eukaryotic gene regulation. Cell Syst 12, 1079-1093.e6. PubMed PMID:34469745.

Bhide, S, Gombalova, D, Mönke, G, Stegmaier, J, Zinchenko, V, Kreshuk, A, Belmonte, JM, Leptin, M (2021). Mechanical competition alters the cellular interpretation of an endogenous genetic program. J Cell Biol 220, . PubMed PMID:34449835.

Matthews, ML, Williams, CM (2021). Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences. Methods Mol Biol 2328, 115-138. PubMed PMID:34251622.

Spurney, R, Schwartz, M, Gobble, M, Sozzani, R, Van den Broeck, L (2021). Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification. Methods Mol Biol 2328, 47-65. PubMed PMID:34251619.

Waldman, AC, Rao, BM, Keung, AJ (2021). Mapping the residue specificities of epigenome enzymes by yeast surface display. Cell Chem Biol 28, 1772-1779.e4. PubMed PMID:34186032.

Elting, MW (2021). Cytoskeletal biophysics: Passive crosslinker adapts to keep microtubule bundles on track. Curr Biol 31, R793-R796. PubMed PMID:34157264.

Uzsoy, ASM, Zareiesfandabadi, P, Jennings, J, Kemper, AF, Elting, MW (2021). Automated tracking of S. pombe spindle elongation dynamics. J Microsc 284, 83-94. PubMed PMID:34152622.

Betegón-Putze, I, Mercadal, J, Bosch, N, Planas-Riverola, A, Marquès-Bueno, M, Vilarrasa-Blasi, J, Frigola, D, Burkart, RC, Martínez, C, Conesa, A et al. (2021). Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots. Mol Syst Biol 17, e9864. PubMed PMID:34132490.

Tomek, KJ, Volkel, K, Indermaur, EW, Tuck, JM, Keung, AJ (2021). Promiscuous molecules for smarter file operations in DNA-based data storage. Nat Commun 12, 3518. PubMed PMID:34112775.

Zhang, Y, Ho, TD, Buchler, NE, Gordân, R (2021). Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions. Genome Res 31, 1216-1229. PubMed PMID:33975875.

Adhyapok, P, Piatkowska, AM, Norman, MJ, Clendenon, SG, Stern, CD, Glazier, JA, Belmonte, JM (2021). A mechanical model of early somite segmentation. iScience 24, 102317. PubMed PMID:33889816.

Van den Broeck, L, Spurney, RJ, Fisher, AP, Schwartz, M, Clark, NM, Nguyen, TT, Madison, I, Gobble, M, Long, T, Sozzani, R et al. (2021). A hybrid model connecting regulatory interactions with stem cell divisions in the root. Quant Plant Biol 2, e2. PubMed PMID:37077208.

Orozco-Navarrete, B, Song, J, Casañal, A, Sozzani, R, Flors, V, Sánchez-Sevilla, JF, Trinkl, J, Hoffmann, T, Merchante, C, Schwab, W et al. (2021). Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response. Hortic Res 8, 58. PubMed PMID:33750764.

Sen, D, Drobna, Z, Keung, AJ (2021). Evaluation of UBE3A antibodies in mice and human cerebral organoids. Sci Rep 11, 6323. PubMed PMID:33737669.

Buckner, E, Tong, H, Ottley, C, Williams, C (2021). High-throughput image segmentation and machine learning approaches in the plant sciences across multiple scales. Emerg Top Life Sci 5, 239-248. PubMed PMID:33660762.

Matange, K, Tuck, JM, Keung, AJ (2021). DNA stability: a central design consideration for DNA data storage systems. Nat Commun 12, 1358. PubMed PMID:33649304.

Kudenov, MW, Scarboro, CG, Altaqui, A, Boyette, M, Yencho, GC, Williams, CM (2021). Internal defect scanning of sweetpotatoes using interactance spectroscopy. PLoS One 16, e0246872. PubMed PMID:33561172.

Bellingham-Johnstun, K, Anders, EC, Ravi, J, Bruinsma, C, Laplante, C (2021). Molecular organization of cytokinesis node predicts the constriction rate of the contractile ring. J Cell Biol 220, . PubMed PMID:33496728.

Matthews, ML, Wang, JP, Sederoff, R, Chiang, VL, Williams, CM (2021). A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa. Comput Struct Biotechnol J 19, 168-182. PubMed PMID:33425249.

Zareiesfandabadi, P, Elting, MW (2021). Viscoelastic Relaxation of the Nuclear Envelope Does Not Cause the Collapse of the Spindle After Ablation in S. pombe. J Undergrad Rep Phys 31, . PubMed PMID:36110330.

Zhang, X, Mennicke, CV, Xiao, G, Beattie, R, Haider, MA, Hippenmeyer, S, Ghashghaei, HT (2020). Clonal Analysis of Gliogenesis in the Cerebral Cortex Reveals Stochastic Expansion of Glia and Cell Autonomous Responses to Egfr Dosage. Cells 9, . PubMed PMID:33322301.

Van Norman, JM, Strader, LC, Sozzani, R (2020). Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth. Curr Opin Plant Biol 57, A1-A3. PubMed PMID:33298311.

Crook, AD, Willoughby, AC, Hazak, O, Okuda, S, VanDerMolen, KR, Soyars, CL, Cattaneo, P, Clark, NM, Sozzani, R, Hothorn, M et al. (2020). BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots. Proc Natl Acad Sci U S A 117, 32750-32756. PubMed PMID:33288706.

Daniels, KE, Elting, MW (2020). Knitting Ripples. Patterns (N Y) 1, 100034. PubMed PMID:33205101.

Brooks, ER, Islam, MT, Anderson, KV, Zallen, JA (2020). Sonic hedgehog signaling directs patterned cell remodeling during cranial neural tube closure. Elife 9, . PubMed PMID:33103996.

Grzymkowski, J, Wyatt, B, Nascone-Yoder, N (2020). The twists and turns of left-right asymmetric gut morphogenesis. Development 147, . PubMed PMID:33046455.

Sen, D, Voulgaropoulos, A, Drobna, Z, Keung, AJ (2020). Human Cerebral Organoids Reveal Early Spatiotemporal Dynamics and Pharmacological Responses of UBE3A. Stem Cell Reports 15, 845-854. PubMed PMID:32916124.

Sen, D, Keung, AJ (2020). Capturing complex epigenetic phenomena through human multicellular systems. Curr Opin Biomed Eng 16, 34-41. PubMed PMID:32905378.

Buckner, E, Madison, I, Melvin, C, Long, T, Sozzani, R, Williams, C (2020). BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana. Methods Cell Biol 160, 419-436. PubMed PMID:32896332.

Madison, I, Melvin, C, Buckner, E, Williams, C, Sozzani, R, Long, T (2020). MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy. Methods Cell Biol 160, 405-418. PubMed PMID:32896331.

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