Troy Ghashghaei

Professor

Publications

TSC tunes progenitor balance and upper-layer neuron generation in neocortex
Casingal, C. R., Nakagawa, N., Yabuno-Nakagawa, K., Meyer, C., Liu, S., Gkini, V., … Anton, E. S. (2025, December 3), Nature. https://doi.org/10.1038/s41586-025-09810-5
Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning
Li, C., Rai, M. R., Cai, Y., Ghashghaei, H. T., & Greenbaum, A. (2024, January 1), Intelligent Computing. https://doi.org/10.34133/icomputing.0095
Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain
Zhang, X., Xiao, G., Johnson, C., Cai, Y., Horowitz, Z. K., Mennicke, C., … Ghashghaei, H. T. (2023), IScience, 26(3), 106242. https://doi.org/10.1016/j.isci.2023.106242
COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains
Cai, Y., Zhang, X., Li, C., Ghashghaei, H. T., & Greenbaum, A. (2023, April 1), Cell Reports Methods. https://doi.org/10.1016/j.crmeth.2023.100454
Deep learning-based adaptive optics for light sheet fluorescence microscopy
Rai, M. R., Li, C., Ghashghaei, H. T., & Greenbaum, A. (2023, May 19), Biomedical Optics Express. https://doi.org/10.1364/BOE.488995
Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning
Li, C., Rai, M. R., Ghashghaei, H. T., & Greenbaum, A. (2022, January 6), Biomedical Optics Express. https://doi.org/10.1364/BOE.447392
Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain
Muthusamy, N., Williams, T. I., Ryan, O. T., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24), GeroScience, Vol. 1, pp. 2077–2094. https://doi.org/10.1007/s11357-022-00517-3
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy
Li, C., Moatti, A., Zhang, X., Ghashghaei, H. T., & Greenbaum, A. (2021, July 7), Biomedical Optics Express, Vol. 12, p. 5214. https://doi.org/10.1364/BOE.427099
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note
Li, C., Moatti, A., Zhang, X., Ghashghaei, H. T., & Greenbaum, A. (2021, December 8), Biomedical Optics Express. https://doi.org/10.1364/BOE.450829
Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet
Cai, Y., Zhang, X., Kovalsky, S. Z., Ghashghaei, H. T., & Greenbaum, A. (2021, September 24), PLoS ONE. https://doi.org/10.1371/journal.pone.0257426

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Troy Ghashghaei