Publications

Matange, K, Brihadiswaran, G, Tomek, KJ, Volkel, K, Townsend, D, Tuck, JM, Keung, AJ (2026). Deep Learning Predicts Dissimilar DNA-DNA Binding and Engineers Hyperconnected Networks. Nat Commun 17, . PubMed PMID:42426013.

Borys, KA, Brooks, ER (2026). Quantitative Analysis of Cell and Tissue Shape During Mouse Cranial Neural Tube Closure. Bio Protoc 16, e5711. PubMed PMID:42305133.

Lannan, J, Floyd, C, Xu, LX, Thompson, PM, Yan, C, Marshall, WF, Vaikuntanathan, S, Dinner, AR, Honts, JE, Bhamla, S et al. (2026). A centrin-Sfi1 myoneme fishnet powers ultrafast calcium-triggered contraction in the giant ciliate Spirostomum ambiguum. Proc Natl Acad Sci U S A 123, e2601408123. PubMed PMID:42213749.

Lee, JB, Caywood, LM, Basinger, R, Abbott, L, Levering, N, Keung, AJ (2026). Epigenome regulators imbue a single eukaryotic promoter with diverse gene expression dynamics. iScience 29, 115805. PubMed PMID:42111206.

Mao, H, Mauny, H, KanchanadeviVenkataraman, O, Laplante, C, Xu, DD, Zhang, Y (2026). SIMBA: an agentic AI platform for single-molecule multidimensional imaging. bioRxiv , . PubMed PMID:42079268.

Gordon, M, Akyol, TY, Amos, B, Andersen, SU, Williams, C (2026). KeySDL: sparse dictionary learning for keystone microbe identification from steady-state observations using a dynamical-systems model. BioData Min 19, 18. PubMed PMID:41715111.

Thayambath, A, Belmonte, JM (2026). Start small: A model for tissue-wide planar cell polarity without morphogens. PLoS Comput Biol 22, e1013938. PubMed PMID:41678596.

Mahoney, T, Needham, C, Hakeem, R, Begley, M, Medina, CP, Elting, MW (2026). Spindle biochemistry responds to compressive force from the nuclear envelope to tune spindle dynamics during closed mitosis. bioRxiv , . PubMed PMID:41648176.

Prudhomme, IS, Brooks, ER, Taneja, N, Bhattacharya, B, LaFleche, BJ, Furuta, Y, Zallen, JA (2025). Genetically engineered ESC-derived embryos reveal Vinculin-dependent force responses required for mammalian neural tube closure. bioRxiv , . PubMed PMID:41497583.

Brooks, ER, Hwang, SH, White, KA, Mukhopadhyay, S (2025). GPR161-GLI3 repressor signaling at cilia directs apical constriction and cell fate during cranial neural tube closure. Development 152, . PubMed PMID:41417007.

Medina, EM, Elting, MW, Fritz-Laylin, L (2026). Cellularization in chytrid fungi uses distinct mechanisms from conventional cytokinesis and cellularization in animals and yeast. Curr Biol 36, 338-354.e5. PubMed PMID:41401808.

Kennedy, T, Neupane, S, Merritt, B, Argüello-Miranda, O (2025). Imaging the Entire Sexual Life Cycle of the Budding Yeast Saccharomyces cerevisiae Using a Microfluidic Platform. Bio Protoc 15, e5536. PubMed PMID:41384095.

Casingal, CR, Nakagawa, N, Yabuno-Nakagawa, K, Meyer, C, Liu, S, Gkini, V, Cho, SJ, Skarica, M, Liang, D, Simon, JM et al. (2026). TSC tunes progenitor balance and upper-layer neuron generation in neocortex. Nature 650, 417-427. PubMed PMID:41339559.

Madison, I, Buckner, ED, de Luis Balaguer, MA, Song, J, Srivastava, D, Selote, D, Hunt, A, Bueso, E, Sozzani, R, Williams, C et al. (2025). Iron deficiency changes regulatory mechanisms governing sieve element cell differentiation. Nat Commun 16, 10196. PubMed PMID:41266392.

Kelkar, GR, Stuppy, SR, Sen, D, Yagci, ZB, Han, L, Land, L, Hartman, JK, Keung, AJ (2025). A human Angelman Syndrome class II pluripotent stem cell line with fluorescent paternal UBE3A reporter. Front Cell Dev Biol 13, 1665693. PubMed PMID:40950402.

Gordon, M, Akyol, TY, Amos, B, Andersen, SU, Williams, C (2025). KeySDL: Sparse Dictionary Learning for Keystone Microbe Identification. bioRxiv , . PubMed PMID:40832167.

Schloop, AE, Hiremath, SV, Shaikh, R, Dima, SS, Lizardo, L, Bhakta, A, Williams, CM, Reeves, GT (2025). Spatiotemporal dynamics of NF-κB/Dorsal inhibitor IκBα/Cactus in Drosophila blastoderm embryos. iScience 28, 112854. PubMed PMID:40662193.

Gomez, JM, Bevilacqua, C, Thayambath, A, Heriche, JK, Leptin, M, Belmonte, JM, Prevedel, R (2025). Highly dynamic mechanical transitions in embryonic cell populations during Drosophila gastrulation. Nat Commun 16, 6473. PubMed PMID:40659644.

Wu, W, Kennedy, T, Arguello-Miranda, O, Lin, KZ (2025). Measuring Regulatory Network Inheritance in Dividing Yeast Cells Using Ordinary Differential Equations. bioRxiv , . PubMed PMID:40631107.

Mao, H, Liu, Y, KanchanadeviVenkataraman, O, Shahid, MA, Laplante, C, Xu, D, Song, KH, Zhang, Y (2025). Framework for Accurate Single-Molecule Spectroscopic Imaging Analyses Using Monte Carlo Simulation and Deep Learning. Anal Chem 97, 16250-16258. PubMed PMID:40613676.

Belmonte, JM, Blanquer, M, Bernabé, G, Jiménez, F, García, JM (2025). Survival risk prediction in hematopoietic stem cell transplantation for multiple myeloma. J Integr Bioinform 22, . PubMed PMID:40459566.

Estridge, RC, Yagci, ZB, Sen, D, Johnson, TJ, Kelkar, GR, Ptacek, TS, Simon, JM, Keung, AJ (2025). Loss of UBE3A impacts both neuronal and non-neuronal cells in human cerebral organoids. Commun Biol 8, 838. PubMed PMID:40447862.

Pring, S, Kato, H, Taniuchi, K, Camagna, M, Saito, M, Tanaka, A, Merritt, BA, Argüello-Miranda, O, Sato, I, Chiba, S et al. (2025). Mixed DAMP/MAMP oligosaccharides promote both growth and defense against fungal pathogens of cucumber. Plant Sci 359, 112578. PubMed PMID:40414359.

Begley, MA, Mahoney, T, Medina, CP, Zareiesfandabadi, P, Rapp, MB, Tirfe, M, LeBlanc, SJ, Betterton, MD, Elting, MW (2026). Mechanical Coupling With the Nuclear Envelope Shapes the Schizosaccharomyces pombe Mitotic Spindle. Cytoskeleton (Hoboken) 83, 40-52. PubMed PMID:40346880.

Kennedy, T, Yalcinkaya, B, Ramakanth, S, Neupane, S, Tadić, N, Buchler, NE, Argüello-Miranda, O (2025). Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle. Mol Biol Cell 36, ar74. PubMed PMID:40327364.

Bogart, AH, Brooks, ER (2025). Canonical Wnt pathway modulation is required to correctly execute multiple independent cellular dynamic programs during cranial neural tube closure. Dev Biol 523, 115-131. PubMed PMID:40280384.

Medina, EM, Elting, MW, Fritz-Laylin, L (2025). Cellularization in chytrid fungi uses distinct mechanisms from conventional cytokinesis and cellularization in animals and yeast. bioRxiv , . PubMed PMID:40196661.

Kaondal, S, Taassob, A, Jeon, S, Lee, SH, Nuñez, HL, Akindipe, BA, Lee, H, Joo, SY, Oliveira, SMD, Argüello-Miranda, O et al. (2025). Generative frame interpolation enhances tracking of biological objects in time-lapse microscopy. bioRxiv , . PubMed PMID:40196554.

Brooks, ER, Moorman, AR, Bhattacharya, B, Prudhomme, IS, Land, M, Alcorn, HL, Sharma, R, Pe'er, D, Zallen, JA (2025). A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate. Elife 13, . PubMed PMID:40192104.

Berkhout, JH, Glazier, JA, Piersma, AH, Belmonte, JM, Legler, J, Spencer, RM, Knudsen, TB, Heusinkveld, HJ (2025). A computational dynamic systems model for in silico prediction of neural tube closure defects. Curr Res Toxicol 8, 100210. PubMed PMID:40034255.

Han, L, Begum Yagci, Z, Keung, AJ (2025). A high sensitivity assay of UBE3A ubiquitin ligase activity. Methods 235, 92-99. PubMed PMID:39933617.

Pring, S, Kato, H, Taniuchi, K, Camagna, M, Saito, M, Tanaka, A, Merritt, BA, Argüello-Miranda, O, Sato, I, Chiba, S et al. (2025). Mixed DAMP/MAMP oligosaccharides promote both growth and defense against fungal pathogens of cucumber. bioRxiv , . PubMed PMID:39763901.

Lannan, J, Floyd, C, Xu, LX, Yan, C, Marshall, WF, Vaikuntanathan, S, Dinner, AR, Honts, JE, Bhamla, S, Elting, MW et al. (2024). Fishnet mesh of centrin-Sfi1 drives ultrafast calcium-activated contraction of the giant cell Spirostomum ambiguum. bioRxiv , . PubMed PMID:39574644.

Tyree, ZL, Bellingham-Johnstun, K, Martinez-Baird, J, Laplante, C (2024). The Myosin-V Myo51 and Alpha-Actinin Ain1p Cooperate during Contractile Ring Assembly and Disassembly in Fission Yeast Cytokinesis. J Fungi (Basel) 10, . PubMed PMID:39330407.

Brooks, ER, Moorman, AR, Bhattacharya, B, Prudhomme, IS, Land, M, Alcorn, HL, Sharma, R, Pe'er, D, Zallen, JA (2025). A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate. bioRxiv , . PubMed PMID:39229123.

Al Asafen, H, Beseli, A, Chen, HY, Hiremath, S, Williams, CM, Reeves, GT (2024). Dynamics of BMP signaling and stable gene expression in the early Drosophila embryo. Biol Open 13, . PubMed PMID:39207258.

Lin, KN, Volkel, K, Cao, C, Hook, PW, Polak, RE, Clark, AS, San Miguel, A, Timp, W, Tuck, JM, Velev, OD et al. (2024). A primordial DNA store and compute engine. Nat Nanotechnol 19, 1654-1664. PubMed PMID:39174834.

Holland, MA, Maisel, K, Ibberson, CB, Wiley, LK, Burnett, DC, Mace, EM, Elting, MW (2024). Extended time, elevated expectations: The unappreciated downsides of pausing the tenure clock. Proc Natl Acad Sci U S A 121, e2403489121. PubMed PMID:39150787.

Li, C, Rai, MR, Cai, Y, Ghashghaei, HT, Greenbaum, A (2024). Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning. Intell Comput 3, . PubMed PMID:39099879.

Fadri, MTM, Lee, JB, Keung, AJ (2024). Summary of ChIP-Seq Methods and Description of an Optimized ChIP-Seq Protocol. Methods Mol Biol 2842, 419-447. PubMed PMID:39012609.

Yagci, ZB, Kelkar, GR, Johnson, TJ, Sen, D, Keung, AJ (2024). Designing Epigenome Editors: Considerations of Biochemical and Locus Specificities. Methods Mol Biol 2842, 23-55. PubMed PMID:39012589.

Kociemba, J, Jørgensen, ACS, Tadić, N, Harris, A, Sideri, T, Chan, WY, Ibrahim, F, Ünal, E, Skehel, M, Shahrezaei, V et al. (2024). Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast. EMBO J 43, 3256-3286. PubMed PMID:38886580.

Ramakanth, S, Kennedy, T, Yalcinkaya, B, Neupane, S, Tadic, N, Buchler, NE, Argüello-Miranda, O (2024). Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle. bioRxiv , . PubMed PMID:38712227.

Grzymkowski, JK, Chiu, YC, Jima, DD, Wyatt, BH, Jayachandran, S, Stutts, WL, Nascone-Yoder, NM (2024). Developmental regulation of cellular metabolism is required for intestinal elongation and rotation. Development 151, . PubMed PMID:38369735.

Anon. (2024). The people behind the papers - Julia Grzymkowski and Nanette Nascone-Yoder. Development 151, . PubMed PMID:38369734.

Haverroth, E, Gobble, M, Bradley, L, Harris-Gilliam, K, Fischer, A, Williams, C, Long, T, Sozzani, R (2024). The Black American experience: Answering the global challenge of broadening participation in STEM/agriculture. Plant Cell 36, 807-811. PubMed PMID:38284514.

Nikas, AN, Curcio, EJ, Nascone-Yoder, N, Lubkin, SR (2024). Morphoelastic models discriminate between different mechanisms of left-right asymmetric stomach morphogenesis. Cells Dev 177, 203902. PubMed PMID:38281683.

Estridge, RC, O'Neill, JE, Keung, AJ (2023). Matrigel Tunes H9 Stem Cell-Derived Human Cerebral Organoid Development. Organoids 2, 165-176. PubMed PMID:38196836.

Li, C, Rai, MR, Cai, Y, Ghashghaei, HT, Greenbaum, A (2023). Enhancing Light-Sheet Fluorescence Microscopy Illumination Beams through Deep Design Optimization. bioRxiv , . PubMed PMID:38077074.

Curcio, EJ, Lubkin, SR (2024). Flexural rigidity of pressurized model notochords in regular packing patterns. Cells Dev 177, 203895. PubMed PMID:38040291.

Rudibaugh, TT, Stuppy, SR, Keung, AJ (2023). Reactive Oxygen Species Mediate Transcriptional Responses to Dopamine and Cocaine in Human Cerebral Organoids. Int J Mol Sci 24, . PubMed PMID:38003664.

Schmittling, SR, Muhammad, D, Haque, S, Long, TA, Williams, CM (2023). Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response. BMC Genomics 24, 620. PubMed PMID:37853316.

Volkel, KD, Lin, KN, Hook, PW, Timp, W, Keung, AJ, Tuck, JM (2023). FrameD: framework for DNA-based data storage design, verification, and validation. Bioinformatics 39, . PubMed PMID:37713474.

Blue, EE, White, JJ, Dush, MK, Gordon, WW, Wyatt, BH, White, P, Marvin, CT, Helle, E, Ojala, T, Priest, JR et al. (2023). Rare variants in CAPN2 increase risk for isolated hypoplastic left heart syndrome. HGG Adv 4, 100232. PubMed PMID:37663545.

Sulis, DB, Jiang, X, Yang, C, Marques, BM, Matthews, ML, Miller, Z, Lan, K, Cofre-Vega, C, Liu, B, Sun, R et al. (2023). Multiplex CRISPR editing of wood for sustainable fiber production. Science 381, 216-221. PubMed PMID:37440632.

Rudibaugh, TT, Keung, AJ (2023). Reactive Oxygen Species Mediate Transcriptional Responses to Dopamine and Cocaine in Human Cerebral Organoids. bioRxiv , . PubMed PMID:37398046.

Tam, RW, Keung, AJ (2023). Profiling transcriptomic responses of human stem cell-derived medium spiny neuron-like cells to exogenous phasic and tonic neurotransmitters. Mol Cell Neurosci 126, 103876. PubMed PMID:37385515.

Rai, MR, Li, C, Ghashghaei, HT, Greenbaum, A (2023). Deep learning-based adaptive optics for light sheet fluorescence microscopy. Biomed Opt Express 14, 2905-2919. PubMed PMID:37342701.

Floyd, C, Molines, AT, Lei, X, Honts, JE, Chang, F, Elting, MW, Vaikuntanathan, S, Dinner, AR, Bhamla, MS (2023). A unified model for the dynamics of ATP-independent ultrafast contraction. Proc Natl Acad Sci U S A 120, e2217737120. PubMed PMID:37307463.

Cai, Y, Zhang, X, Li, C, Ghashghaei, HT, Greenbaum, A (2023). COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains. Cell Rep Methods 3, 100454. PubMed PMID:37159668.

Bellingham-Johnstun, K, Thorn, A, Belmonte, JM, Laplante, C (2023). Microtubule competition and cell growth recenter the nucleus after anaphase in fission yeast. Mol Biol Cell 34, ar77. PubMed PMID:37099380.

Polak, RE, Keung, AJ (2023). A molecular assessment of the practical potential of DNA-based computation. Curr Opin Biotechnol 81, 102940. PubMed PMID:37058876.

Bellingham-Johnstun, K, Tyree, ZL, Martinez-Baird, J, Thorn, A, Laplante, C (2023). Actin-Microtubule Crosstalk Imparts Stiffness to the Contractile Ring in Fission Yeast. Cells 12, . PubMed PMID:36980258.

Zhang, X, Xiao, G, Johnson, C, Cai, Y, Horowitz, ZK, Mennicke, C, Coffey, R, Haider, M, Threadgill, D, Eliscu, R et al. (2023). Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain. iScience 26, 106242. PubMed PMID:36915679.

Bellingham-Johnstun, K, Tyree, ZL, Martinez-Baird, J, Thorn, A, Laplante, C (2023). Actin-microtubule crosstalk imparts stiffness to the contractile ring in fission yeast. bioRxiv , . PubMed PMID:36909652.

Han, L, Lee, JB, Indermaur, EW, Keung, AJ (2023). Chaetocin disrupts the SUV39H1-HP1 interaction independent of SUV39H1 methyltransferase activity. Biochem J 480, 421-432. PubMed PMID:36896918.

Bellingham-Johnstun, K, Thorn, A, Belmonte, J, Laplante, C (2023). Microtubule competition and cell growth recenter the nucleus after anaphase in fission yeast. bioRxiv , . PubMed PMID:36778333.

Begley, MA, Elting, MW (2023). Mitosis: Augmin-based bridges keep kinetochores in line. Curr Biol 33, R118-R121. PubMed PMID:36750026.

Curcio, EJ, Lubkin, SR (2023). Physical models of notochord cell packing reveal how tension ratios determine morphometry. Cells Dev 173, 203825. PubMed PMID:36706628.

Busato, S, Gordon, M, Chaudhari, M, Jensen, I, Akyol, T, Andersen, S, Williams, C (2023). Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies. Curr Opin Plant Biol 71, 102326. PubMed PMID:36538837.

Mustamin, Y, Akyol, TY, Gordon, M, Manggabarani, AM, Isomura, Y, Kawamura, Y, Bamba, M, Williams, C, Andersen, SU, Sato, S et al. (2023). FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus. Plant Physiol 191, 1138-1152. PubMed PMID:36448631.

Bellingham-Johnstun, K, Commer, B, Levesque, B, Tyree, ZL, Laplante, C (2022). Imp2p forms actin-dependent clusters and imparts stiffness to the contractile ring. Mol Biol Cell 33, ar145. PubMed PMID:36287824.

Silva, AM, Chan, FY, Norman, MJ, Sobral, AF, Zanin, E, Gassmann, R, Belmonte, JM, Carvalho, AX (2023). β-heavy-spectrin stabilizes the constricting contractile ring during cytokinesis. J Cell Biol 222, . PubMed PMID:36219157.

Amses, KR, Simmons, DR, Longcore, JE, Mondo, SJ, Seto, K, Jerônimo, GH, Bonds, AE, Quandt, CA, Davis, WJ, Chang, Y et al. (2022). Diploid-dominant life cycles characterize the early evolution of Fungi. Proc Natl Acad Sci U S A 119, e2116841119. PubMed PMID:36037379.

Muhammad, D, Clark, NM, Haque, S, Williams, CM, Sozzani, R, Long, TA (2022). POPEYE intercellular localization mediates cell-specific iron deficiency responses. Plant Physiol 190, 2017-2032. PubMed PMID:35920794.

Zahn, N, James-Zorn, C, Ponferrada, VG, Adams, DS, Grzymkowski, J, Buchholz, DR, Nascone-Yoder, NM, Horb, M, Moody, SA, Vize, PD et al. (2022). Normal Table of Xenopus development: a new graphical resource. Development 149, . PubMed PMID:35833709.

Feng, W, Argüello-Miranda, O, Qian, S, Wang, F (2022). Cdc14 plans autophagy for meiotic cell divisions. Autophagy 18, 1481-1482. PubMed PMID:35617128.

Tam, RW, Keung, AJ (2022). Human Pluripotent Stem Cell-Derived Medium Spiny Neuron-like Cells Exhibit Gene Desensitization. Cells 11, . PubMed PMID:35563715.

Acuña-Rodriguez, JP, Mena-Vega, JP, Argüello-Miranda, O (2022). Live-cell fluorescence spectral imaging as a data science challenge. Biophys Rev 14, 579-597. PubMed PMID:35528031.

Meanor, JN, Keung, AJ, Rao, BM, Gera, N (2022). Yeast Display Guided Selection of pH-Dependent Binders. Methods Mol Biol 2491, 293-311. PubMed PMID:35482197.

Kudenov, MW, Altaqui, A, Williams, C (2022). Practical spectral photography II: snapshot spectral imaging using linear retarders and microgrid polarization cameras. Opt Express 30, 12337-12352. PubMed PMID:35472871.

Tong, H, Chen, H, Williams, CM (2022). Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs. Viruses 14, . PubMed PMID:35458567.

Li, C, Rai, MR, Ghashghaei, HT, Greenbaum, A (2022). Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning. Biomed Opt Express 13, 888-901. PubMed PMID:35284156.

Moshtohry, M, Bellingham-Johnstun, K, Elting, MW, Laplante, C (2022). Laser ablation reveals the impact of Cdc15p on the stiffness of the contractile ring. Mol Biol Cell 33, br9. PubMed PMID:35274981.

Feng, W, Argüello-Miranda, O, Qian, S, Wang, F (2022). Cdc14 spatiotemporally dephosphorylates Atg13 to activate autophagy during meiotic divisions. J Cell Biol 221, . PubMed PMID:35238874.

Meanor, JN, Keung, AJ, Rao, BM (2022). Modified Histone Peptides Linked to Magnetic Beads Reduce Binding Specificity. Int J Mol Sci 23, . PubMed PMID:35163614.

Li, C, Moatti, A, Zhang, X, Ghashghaei, HT, Greenbaum, A (2022). Erratum: Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher's note. Biomed Opt Express 13, 373. PubMed PMID:35154877.

Muthusamy, N, Williams, TI, O'Toole, R, Brudvig, JJ, Adler, KB, Weimer, JM, Muddiman, DC, Ghashghaei, HT (2022). Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain. Geroscience 44, 2077-2094. PubMed PMID:35075585.

Zareiesfandabadi, P, Elting, MW (2022). Force by minus-end motors Dhc1 and Klp2 collapses the S. pombe spindle after laser ablation. Biophys J 121, 263-276. PubMed PMID:34951983.

Coller, HA (2022). Stressed-out yeast do not pass GO. J Cell Biol 221, . PubMed PMID:34932069.

Sorrell, EL, Lubkin, SR (2022). Bubble packing, eccentricity, and notochord development. Cells Dev 169, 203753. PubMed PMID:34728430.

Argüello-Miranda, O, Marchand, AJ, Kennedy, T, Russo, MAX, Noh, J (2022). Cell cycle-independent integration of stress signals by Xbp1 promotes Non-G1/G0 quiescence entry. J Cell Biol 221, . PubMed PMID:34694336.

Lin, CY, Sun, Y, Song, J, Chen, HC, Shi, R, Yang, C, Liu, J, Tunlaya-Anukit, S, Liu, B, Loziuk, PL et al. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. Front Plant Sci 12, 727932. PubMed PMID:34691108.

Amaral, AF, McQueen, BE, Bellingham-Johnstun, K, Poston, TB, Darville, T, Nagarajan, UM, Laplante, C, Käser, T (2021). Host-Pathogen Interactions of Chlamydia trachomatis in Porcine Oviduct Epithelial Cells. Pathogens 10, . PubMed PMID:34684219.

Begley, MA, Solon, AL, Davis, EM, Sherrill, MG, Ohi, R, Elting, MW (2021). K-fiber bundles in the mitotic spindle are mechanically reinforced by Kif15. Mol Biol Cell 32, br11. PubMed PMID:34668719.

Sobral, AF, Chan, FY, Norman, MJ, Osório, DS, Dias, AB, Ferreira, V, Barbosa, DJ, Cheerambathur, D, Gassmann, R, Belmonte, JM et al. (2021). Plastin and spectrin cooperate to stabilize the actomyosin cortex during cytokinesis. Curr Biol 31, 5415-5428.e10. PubMed PMID:34666005.

Sen, D, Voulgaropoulos, A, Keung, AJ (2021). Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids. BMC Biotechnol 21, 59. PubMed PMID:34641840.

Cai, Y, Zhang, X, Kovalsky, SZ, Ghashghaei, HT, Greenbaum, A (2021). Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet. PLoS One 16, e0257426. PubMed PMID:34559842.

Plant Cell Atlas Consortium, Jha, SG, Borowsky, AT, Cole, BJ, Fahlgren, N, Farmer, A, Huang, SC, Karia, P, Libault, M, Provart, NJ et al. (2021). Vision, challenges and opportunities for a Plant Cell Atlas. Elife 10, . PubMed PMID:34491200.

Wyatt, BH, Amin, NM, Bagley, K, Wcisel, DJ, Dush, MK, Yoder, JA, Nascone-Yoder, NM (2021). Single-minded 2 is required for left-right asymmetric stomach morphogenesis. Development 148, . PubMed PMID:34486651.

Lee, JB, Caywood, LM, Lo, JY, Levering, N, Keung, AJ (2021). Mapping the dynamic transfer functions of eukaryotic gene regulation. Cell Syst 12, 1079-1093.e6. PubMed PMID:34469745.

Bhide, S, Gombalova, D, Mönke, G, Stegmaier, J, Zinchenko, V, Kreshuk, A, Belmonte, JM, Leptin, M (2021). Mechanical competition alters the cellular interpretation of an endogenous genetic program. J Cell Biol 220, . PubMed PMID:34449835.

Matthews, ML, Williams, CM (2021). Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences. Methods Mol Biol 2328, 115-138. PubMed PMID:34251622.

Waldman, AC, Rao, BM, Keung, AJ (2021). Mapping the residue specificities of epigenome enzymes by yeast surface display. Cell Chem Biol 28, 1772-1779.e4. PubMed PMID:34186032.

Elting, MW (2021). Cytoskeletal biophysics: Passive crosslinker adapts to keep microtubule bundles on track. Curr Biol 31, R793-R796. PubMed PMID:34157264.

Uzsoy, ASM, Zareiesfandabadi, P, Jennings, J, Kemper, AF, Elting, MW (2021). Automated tracking of S. pombe spindle elongation dynamics. J Microsc 284, 83-94. PubMed PMID:34152622.

Tomek, KJ, Volkel, K, Indermaur, EW, Tuck, JM, Keung, AJ (2021). Promiscuous molecules for smarter file operations in DNA-based data storage. Nat Commun 12, 3518. PubMed PMID:34112775.

Zhang, Y, Ho, TD, Buchler, NE, Gordân, R (2021). Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions. Genome Res 31, 1216-1229. PubMed PMID:33975875.

Adhyapok, P, Piatkowska, AM, Norman, MJ, Clendenon, SG, Stern, CD, Glazier, JA, Belmonte, JM (2021). A mechanical model of early somite segmentation. iScience 24, 102317. PubMed PMID:33889816.

Sen, D, Drobna, Z, Keung, AJ (2021). Evaluation of UBE3A antibodies in mice and human cerebral organoids. Sci Rep 11, 6323. PubMed PMID:33737669.

Buckner, E, Tong, H, Ottley, C, Williams, C (2021). High-throughput image segmentation and machine learning approaches in the plant sciences across multiple scales. Emerg Top Life Sci 5, 239-248. PubMed PMID:33660762.

Matange, K, Tuck, JM, Keung, AJ (2021). DNA stability: a central design consideration for DNA data storage systems. Nat Commun 12, 1358. PubMed PMID:33649304.

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